PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9929143g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 268aa    MW: 30725.6 Da    PI: 7.1199
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9929143g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC161.81e-50761802102
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      +++fw++q   ie+a df+nh+lPlarikki+k+d e+v+misaeaPv+++kace+fi eltlr+w+h+eenkrrtl+k+diaaa++rtdifdf
  MA_9929143g0010  76 IEVFWANQmqeIEQAVDFRNHSLPLARIKKIMKSDdENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDF 169
                      579***99778899*******************96267******************************************************** PP

            NF-YC  92 lvdivprdelk 102
                      l+divprdelk
  MA_9929143g0010 170 LIDIVPRDELK 180
                      ********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.99E-3340170IPR009072Histone-fold
PfamPF008081.4E-2297161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.6E-3798176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEEHSAMQHM PMHYRAMPYA NAQIQPNIAA HGAFQQPPIH AHHHALSSHH NQLPYQHQQQ  60
IHQHQRQLHH QQQQHIEVFW ANQMQEIEQA VDFRNHSLPL ARIKKIMKSD DENVRMISAE  120
APVVFAKACE MFINELTLRA WIHTEENKRR TLQKNDIAAA IARTDIFDFL IDIVPRDELK  180
EDQVINLGNP RSALSVGSSS TNAAAGANSF PYYYLPNQHS VPHGVFVGKP MDPTIYMQQP  240
QSPVAYMPNI WQWGHMQADQ SKSPNPGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B6e-4084176497NF-YC
4awl_C6e-4084176194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4084176194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0846470.0EF084647.1 Picea sitchensis clone WS02719_H11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.12e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.12e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.12e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.12e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.12e-74PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9FMV59e-66NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NTJ80.0A9NTJ8_PICSI; Putative uncharacterized protein
STRINGGLYMA08G17630.12e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-63nuclear factor Y, subunit C2